open source plugin to pymol Search Results


geo_measures pymol plugin v.0.9  (KAGAMI Inc)
90
KAGAMI Inc geo_measures pymol plugin v.0.9
Geo Measures Pymol Plugin V.0.9, supplied by KAGAMI Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/geo+measures+plugin+for+pymol/pm36617426-189-10-14
Average 90 stars, based on 1 article reviews
geo_measures pymol plugin v.0.9 - by Bioz Stars, 2026-10
90/100 stars
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autodock pymol plugin  (AUTODOCK GmbH)
90
AUTODOCK GmbH autodock pymol plugin
Autodock Pymol Plugin, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/autodock+pymol+plugin/10__1039_slash_c9cc09849f-40-25-24
Average 90 stars, based on 1 article reviews
autodock pymol plugin - by Bioz Stars, 2026-10
90/100 stars
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4.242 plugin on pymol  (AUTODOCK GmbH)
90
AUTODOCK GmbH 4.242 plugin on pymol
4.242 Plugin On Pymol, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/4+242+plugin+on+pymol/10__1021_slash_acs__jmedchem__8b00576-227-9-8
Average 90 stars, based on 1 article reviews
4.242 plugin on pymol - by Bioz Stars, 2026-10
90/100 stars
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pymol plugin  (SourceForge net)
90
SourceForge net pymol plugin
Screen capture to illustrate the interest of the InterEvol <t>PyMol</t> <t>plugin</t> for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.
Pymol Plugin, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/open+source+version+of+pymol/pmc03245184-37-2-10
Average 90 stars, based on 1 article reviews
pymol plugin - by Bioz Stars, 2026-10
90/100 stars
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apbs plugin for pymol  (DeLano Scientific)
90
DeLano Scientific apbs plugin for pymol
Screen capture to illustrate the interest of the InterEvol <t>PyMol</t> <t>plugin</t> for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.
Apbs Plugin For Pymol, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/apbs+plugin+for+pymol/pmc03870256__mbo006131686s1-27-1-8
Average 90 stars, based on 1 article reviews
apbs plugin for pymol - by Bioz Stars, 2026-10
90/100 stars
  Buy from Supplier
autodock/vina pymol plugin  (AUTODOCK GmbH)
90
AUTODOCK GmbH autodock/vina pymol plugin
Screen capture to illustrate the interest of the InterEvol <t>PyMol</t> <t>plugin</t> for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.
Autodock/Vina Pymol Plugin, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/autodock+vina+pymol+plugin/pm31712123-97-14-13
Average 90 stars, based on 1 article reviews
autodock/vina pymol plugin - by Bioz Stars, 2026-10
90/100 stars
  Buy from Supplier
kv finder software pymol interface plugin  (Schrodinger LLC)
90
Schrodinger LLC kv finder software pymol interface plugin
Screen capture to illustrate the interest of the InterEvol <t>PyMol</t> <t>plugin</t> for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.
Kv Finder Software Pymol Interface Plugin, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/kv+finder+software+pymol+interface+plugin/pm31810135-34-5-16
Average 90 stars, based on 1 article reviews
kv finder software pymol interface plugin - by Bioz Stars, 2026-10
90/100 stars
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pymol (apbs plugin)  (Schrodinger LLC)
90
Schrodinger LLC pymol (apbs plugin)
Popular software used for viral capsid assembly.
Pymol (Apbs Plugin), supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/apbs+module+implemented+in+pymol/pmc11674207-13-1-5
Average 90 stars, based on 1 article reviews
pymol (apbs plugin) - by Bioz Stars, 2026-10
90/100 stars
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docking using pymol plugin  (AUTODOCK GmbH)
90
AUTODOCK GmbH docking using pymol plugin
Popular software used for viral capsid assembly.
Docking Using Pymol Plugin, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/docking+using+pymol+plugin/pm33927975-165-10-12
Average 90 stars, based on 1 article reviews
docking using pymol plugin - by Bioz Stars, 2026-10
90/100 stars
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mutagenesis plugin in pymol  (Schrodinger LLC)
90
Schrodinger LLC mutagenesis plugin in pymol
Popular software used for viral capsid assembly.
Mutagenesis Plugin In Pymol, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/pymol+mutagenesis+function/pmc08256087__pnas__2100474118__sapp-140-17-21
Average 90 stars, based on 1 article reviews
mutagenesis plugin in pymol - by Bioz Stars, 2026-10
90/100 stars
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vina 1.1.2 plugin in the pymol  (AUTODOCK GmbH)
90
AUTODOCK GmbH vina 1.1.2 plugin in the pymol
Popular software used for viral capsid assembly.
Vina 1.1.2 Plugin In The Pymol, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/vina+1+1+2+software/pm30198396-79-3-2
Average 90 stars, based on 1 article reviews
vina 1.1.2 plugin in the pymol - by Bioz Stars, 2026-10
90/100 stars
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pymol  (DeLano Scientific)
90
DeLano Scientific pymol
Popular software used for viral capsid assembly.
Pymol, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/open+source+plugin+to+pymol/pymol/10__1016_slash_j__comtox__2019__100095-39-3-6
Average 90 stars, based on 1 article reviews
pymol - by Bioz Stars, 2026-10
90/100 stars
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Image Search Results


Screen capture to illustrate the interest of the InterEvol PyMol plugin for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.

Journal: Nucleic Acids Research

Article Title: InterEvol database: exploring the structure and evolution of protein complex interfaces

doi: 10.1093/nar/gkr845

Figure Lengend Snippet: Screen capture to illustrate the interest of the InterEvol PyMol plugin for diving into the structures of complex interfaces interactively with their evolutionary properties. The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14). The interface coordinates files were downloaded from InterEvol database in which the chains have been renumbered to match the positions in the alignment [R31, N35 and E41 in Rpb4 (2c35) stand for R44, N48 and E54 in the original PDB]. After selecting a small set of positions neighbouring at the interface it is possible to display a restricted view of the multiple sequence alignment for the 2c35 complex. Specific position can then be selected from the alignment panel and focused on in the structural panel allowing a cross talk between both dimensions. A compensatory switch between two positions of Rpb4 to maintain a salt–bridge interaction with an invariant acidic residue of Rpb7 is presented. The pre-computed alignment reveals this coordinated switch between positions 31 and 35. Retrieving the superimposed structures of the 1y14 complex reveals how structural micro-environments can adapt to allow for the plasticity of the interface in response to potentially deleterious sequence changes.

Article Snippet: Furthermore, an interactive PyMol plugin (The PyMol Molecular Graphics System, http://pymol.sourceforge.net ) was developed to combine the structural exploration of interfaces with the targeted inspection of interologs multiple sequence alignments.

Techniques: Sequencing, Residue

Popular software used for viral capsid assembly.

Journal: Cells

Article Title: Modeling Viral Capsid Assembly: A Review of Computational Strategies and Applications

doi: 10.3390/cells13242088

Figure Lengend Snippet: Popular software used for viral capsid assembly.

Article Snippet: , PyMOL (APBS Plugin) , Schrodinger, LLC , 2000 , Easy visualization of electrostatic potentials on molecular surfaces. , https://pymol.org/ (accessed on 11 December 2024).

Techniques: Software, Polymer